A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

AbsoluteCrossoverScalingControl - Class in edu.uci.ics.jung.visualization.control

scales to the absolute value passed as an argument.

AbsoluteCrossoverScalingControl() - Constructor for class edu.uci.ics.jung.visualization.control.AbsoluteCrossoverScalingControl

AbstractArchetypeEdge - Class in edu.uci.ics.jung.graph.impl

AbstractArchetypeEdge() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeEdge

AbstractArchetypeGraph - Class in edu.uci.ics.jung.graph.impl

AbstractArchetypeGraph() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph

AbstractArchetypeGraph.Requirements - Class in edu.uci.ics.jung.graph.impl

AbstractArchetypeGraph.Requirements() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.Requirements

AbstractArchetypeVertex - Class in edu.uci.ics.jung.graph.impl

AbstractArchetypeVertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeVertex

AbstractEdgePaintFunction - Class in edu.uci.ics.jung.graph.decorators

An implementation of EdgePaintFunction that is appropriate for edge shapes that are not filled, such as lines or curves.

AbstractEdgePaintFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractEdgePaintFunction

AbstractEdgeShapeFunction - Class in edu.uci.ics.jung.graph.decorators

An interface for decorators that return a Shape for a specified edge.

AbstractEdgeShapeFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractEdgeShapeFunction

AbstractElement - Class in edu.uci.ics.jung.graph.impl

AbstractElement() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractElement

AbstractGraphMousePlugin - Class in edu.uci.ics.jung.visualization.control

a base class for GraphMousePlugin instances.

AbstractGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AbstractGraphMousePlugin

create an instance with passed values

AbstractHyperedge - Class in edu.uci.ics.jung.graph.impl

This class provides a skeletal implementation of the Hyperedge interface to minimize the effort required to implement this interface.

AbstractHyperedge() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHyperedge

AbstractHyperUnitBPG - Class in edu.uci.ics.jung.graph.impl

Deprecated. As of version 1.7, JUNG now includes native versions of hypergraph classes.

AbstractHyperUnitBPG() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG

Deprecated.

AbstractHypervertex - Class in edu.uci.ics.jung.graph.impl

This class provides a skeletal implementation of the Hypervertex interface to minimize the effort required to implement this interface.

AbstractHypervertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHypervertex

AbstractIterativeRanker - Class in scratch.joshua.ranking

AbstractIterativeRanker(ArchetypeGraph, int, double) - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker

AbstractIterativeRanker(ArchetypeGraph, NumberVertexValue, int, double) - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker

AbstractIterativeRanker(ArchetypeGraph, NumberEdgeValue, int, double) - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker

AbstractIterativeRanker(ArchetypeGraph, NumberVertexValue, NumberEdgeValue, int, double) - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker

AbstractIterativeRanker.UniformIncident - Class in scratch.joshua.ranking

AbstractIterativeRanker.UniformIncident() - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker.UniformIncident

AbstractIterativeRanker.UniformOut - Class in scratch.joshua.ranking

AbstractIterativeRanker.UniformOut() - Constructor for class scratch.joshua.ranking.AbstractIterativeRanker.UniformOut

AbstractLayout - Class in edu.uci.ics.jung.visualization

Implements some of the dirty work of writing a layout algorithm, allowing the user to express their major intent more simply.

AbstractLayout(Graph) - Constructor for class edu.uci.ics.jung.visualization.AbstractLayout

Constructor.

AbstractLayout - Class in samples.preview_new_graphdraw

This class is essentially a decorator: for each vertex or edge, it must return a VisVertex or VisEdge object.

AbstractLayout() - Constructor for class samples.preview_new_graphdraw.AbstractLayout

AbstractLensSupport - Class in edu.uci.ics.jung.visualization.transform

A class to make it easy to add an examining lens to a jung graph application.

AbstractLensSupport(VisualizationViewer, ModalGraphMouse) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport

create the base class, setting common members and creating a custom GraphMouse

AbstractLensSupport.Lens - Class in edu.uci.ics.jung.visualization.transform

the background for the hyperbolic projection

AbstractLensSupport.Lens(LensTransformer) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.Lens

AbstractLensSupport.LensControls - Class in edu.uci.ics.jung.visualization.transform

the background for the hyperbolic projection

AbstractLensSupport.LensControls(LensTransformer) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.LensControls

AbstractModalGraphMouse - Class in edu.uci.ics.jung.visualization.control

AbstractModalGraphMouse is a PluggableGraphMouse class that manages a collection of plugins for picking and transforming the graph.

AbstractModalGraphMouse() - Constructor for class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse

AbstractPartition - Class in scratch.scott.partition

AbstractPartition() - Constructor for class scratch.scott.partition.AbstractPartition

AbstractPartitionClass - Class in scratch.scott.partition

AbstractPickedState - Class in edu.uci.ics.jung.visualization

An abstract class to support ItemEvents for PickedState

AbstractPickedState() - Constructor for class edu.uci.ics.jung.visualization.AbstractPickedState

AbstractPopupGraphMousePlugin - Class in edu.uci.ics.jung.visualization.control

AbstractPopupGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.AbstractPopupGraphMousePlugin

AbstractPopupGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AbstractPopupGraphMousePlugin

AbstractRanker - Class in edu.uci.ics.jung.algorithms.importance

Abstract class for algorithms that rank nodes or edges by some "importance" metric.

AbstractRanker() - Constructor for class edu.uci.ics.jung.algorithms.importance.AbstractRanker

AbstractRanker - Class in scratch.joshua.ranking

AbstractRanker(ArchetypeGraph) - Constructor for class scratch.joshua.ranking.AbstractRanker

AbstractRanker(ArchetypeGraph, NumberEdgeValue) - Constructor for class scratch.joshua.ranking.AbstractRanker

AbstractRenderer - Class in edu.uci.ics.jung.visualization

This abstract class structures much of the annoying bits of Renderers, allowing the user to simply override the important methods and move on.

AbstractRenderer() - Constructor for class edu.uci.ics.jung.visualization.AbstractRenderer

AbstractSparseEdge - Class in edu.uci.ics.jung.graph.impl

This class provides a skeletal implementation of the Edge interface to minimize the effort required to implement this interface.

AbstractSparseEdge(Vertex, Vertex) - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseEdge

Creates an edge connecting vertices from and to.

AbstractSparseGraph - Class in edu.uci.ics.jung.graph.impl

This class provides a skeletal implementation of the Graph interface to minimize the effort required to implement this interface.

AbstractSparseGraph() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseGraph

Creates an instance of a sparse graph.

AbstractSparseVertex - Class in edu.uci.ics.jung.graph.impl

This class provides a skeletal implementation of the Vertex interface to minimize the effort required to implement this interface.

AbstractSparseVertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseVertex

Creates a new instance of a vertex for inclusion in a sparse graph.

AbstractVertexMapper - Class in edu.uci.ics.jung.utils

An abstract class based on VertexMapper that specifies a destination graph.

AbstractVertexMapper(ArchetypeGraph) - Constructor for class edu.uci.ics.jung.utils.AbstractVertexMapper

AbstractVertexShapeFunction - Class in edu.uci.ics.jung.graph.decorators

AbstractVertexShapeFunction(VertexSizeFunction, VertexAspectRatioFunction) - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction

AbstractVertexShapeFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction

acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.EdgePredicateFilter

acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.GeneralEdgeAcceptFilter

Determines whether the current edge should be accepted into the Graph.

acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.impl.WeightedEdgeGraphFilter

acceptEdge(Edge) - Method in class scratch.danyel.DemoTemporalRenderer.TimeFunc

acceptEdge(Edge) - Method in interface scratch.danyel.TemporalFunction

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.GeneralVertexAcceptFilter

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter

Passes the vertex if its StringLabeller value compares over (or under) the threshold.

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.DropSoloNodesFilter

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.NumericDecorationFilter

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.TrivialFilter

Returns true for all vertices.

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.VertexPredicateFilter

acceptVertex(Vertex) - Method in class scratch.danyel.DemoTemporalRenderer.TimeFunc

acceptVertex(Vertex) - Method in interface scratch.danyel.TemporalFunction

accumulate(double) - Method in class edu.uci.ics.jung.statistics.StatisticalMoments

statistical moment accumulation up to order 4.

actionPerformed(ActionEvent) - Method in class samples.graph.PluggableRendererDemo

actionPerformed(ActionEvent) - Method in class samples.graph.ShowLayouts.GraphChooser

actionPerformed(ActionEvent) - Method in class scratch.scott.OpenFileHandler

activate(boolean) - Method in class edu.uci.ics.jung.visualization.transform.AbstractLensSupport

activate() - Method in class edu.uci.ics.jung.visualization.transform.LayoutLensSupport

activate() - Method in interface edu.uci.ics.jung.visualization.transform.LensSupport

activate(boolean) - Method in interface edu.uci.ics.jung.visualization.transform.LensSupport

activate() - Method in class edu.uci.ics.jung.visualization.transform.shape.ViewLensSupport

add(Object) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.Requirements

add(Object) - Method in class edu.uci.ics.jung.utils.MapBinaryHeap

Inserts o into this collection.

add(double) - Method in class edu.uci.ics.jung.utils.MutableDouble

Increases the double's value by value.

add(double) - Method in class edu.uci.ics.jung.utils.MutableInteger

Increases the int's value by value.

add(GraphMousePlugin) - Method in class edu.uci.ics.jung.visualization.control.PluggableGraphMouse

add(double, double) - Method in class edu.uci.ics.jung.visualization.Coordinates

Increases the x and y values of this scalar by (x, y).

add(Icon) - Method in class samples.graph.VertexImageShaperDemo.LayeredIcon

add(Coordinates, double, double) - Static method in class samples.preview_new_graphdraw.CoordinateUtil

add(LayoutTransformer) - Method in class samples.preview_new_graphdraw.iter.TransformerPipeline

add(Object) - Method in class scratch.danyel.simplegraph.SimpleGraph

add(UserDataContainer) - Method in class scratch.scott.partition.AbstractPartitionClass

add(W) - Method in interface scratch.tom.simpleGraph.Edge.Hyper

add(V) - Method in class scratch.tom.simpleGraph.HyperEdge

addAll(Collection) - Method in class scratch.danyel.simplegraph.SimpleGraph

addAll(Collection<W>) - Method in interface scratch.tom.simpleGraph.Edge.Hyper

addAll(Collection<V>) - Method in class scratch.tom.simpleGraph.HyperEdge

addAllNotInitializers(Collection, Collection) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph

Adds all the predicates in source to the list in target, except those that answer to isInitializationPredicate.

addBipartiteEdge(BipartiteEdge) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph

Adds a BipartiteEdge to the Graph.

addBottomControls(JPanel) - Method in class samples.graph.PluggableRendererDemo

addChangeListener(ChangeListener) - Method in interface edu.uci.ics.jung.utils.ChangeEventSupport

addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.utils.DefaultChangeEventSupport

addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.AbstractLayout

Adds a ChangeListener.

addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel

Adds a ChangeListener.

addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.LayoutDecorator

addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.PersistentLayoutImpl

addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer

Adds a ChangeListener.

addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator

addChangeListener(ChangeListener) - Method in interface edu.uci.ics.jung.visualization.VisualizationModel

Register l as a listeners to changes in the model.

addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer

Adds a ChangeListener.

addChangeListener(ChangeListener) - Method in class scratch.biao.SliderPanel

addClickListener(ClickListener) - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanel

addCluster(Set) - Method in class edu.uci.ics.jung.algorithms.cluster.ClusterSet

Adds a new cluster to the collection.

addCollection(Collection, Comparator, Predicate, boolean) - Static method in class edu.uci.ics.jung.utils.CollectionFactory

addCollection(Collection, Comparator) - Static method in class edu.uci.ics.jung.utils.CollectionFactory

addCollection(Collection, Predicate) - Static method in class edu.uci.ics.jung.utils.CollectionFactory

addCollection(Collection, Comparator, Predicate) - Static method in class edu.uci.ics.jung.utils.CollectionFactory

addDecorator(Decorator) - Method in class scratch.scott.registry.RegistryDecoratorSet

addDecoratorAsDefault(Decorator) - Method in class scratch.scott.registry.RegistryDecoratorSet

addDirectedEdge(E, V, V) - Method in interface scratch.joshua.jung_2_0.core.DirectedGraph

addDirectedEdge(E, V, V) - Method in class scratch.joshua.jung_2_0.core.SimpleDirectedSparseGraph

Adds edge to the graph.

addDirectedVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Deprecated. As of version 1.2, replaced by GraphUtils.addVertices(edu.uci.ics.jung.graph.Graph, int).

addEdge(Graph, Vertex, Element, Vertex, NumberEdgeValue) - Method in class edu.uci.ics.jung.algorithms.transformation.FoldingTransformer

Creates a new edge from firstEnd to secondEnd in newGraph.

addEdge(Edge) - Method in interface edu.uci.ics.jung.graph.Graph

Adds e to this graph, and returns a reference to the added vertex.

addEdge(Hyperedge) - Method in interface edu.uci.ics.jung.graph.Hypergraph

Adds e to this graph, and returns a reference to the added edge.

addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseGraph

addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph

Deprecated. Use addBipartiteEdge

addEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG

Deprecated. Adds a single edge to the graph

addEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.SetHypergraph

addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.SparseTree

addEdge(Graph, Vertex, Vertex) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Adds an appropriate edge between two vertices.

addEdge(Object, Object) - Method in class scratch.danyel.simplegraph.SimpleGraph

By default, adds an undirected edge

addEdge(Object, Object, boolean) - Method in class scratch.danyel.simplegraph.SimpleGraph

addEdge(E) - Method in class scratch.tom.simpleGraph.DefaultGraph

note that vertices in the new edge are added to the graph if not there already

addEdge(E) - Method in interface scratch.tom.simpleGraph.Graph

addEdges(Set) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG

Deprecated.

addEdges(Graph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Adds all edges in the specified set to g.

addEdges(Hypergraph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Adds all edges in the specified set to g.

addEdges(Collection<E>) - Method in class scratch.tom.simpleGraph.DefaultGraph

note that vertices in the new edges are added to the graph if not there already

addEdges(Collection<E>) - Method in interface scratch.tom.simpleGraph.Graph

addEdges(Graph, Edge[]) - Method in class test.edu.uci.ics.jung.algorithms.shortestpath.TestShortestPath

addEdgeSubset(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils

Creates an edge subset for g based on p, which will be maintained by the g's SubsetManager.

addEdgeSubset(Predicate) - Method in class edu.uci.ics.jung.utils.SubsetManager

Creates an edge subset based on p.

addGraph_internal(AbstractArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractElement

Attaches this vertex to the specified graph g.

addGraphMouseListener(GraphMouseListener) - Method in class edu.uci.ics.jung.visualization.GraphDraw

Deprecated. Use getVisualizationViewer.addMouseListener( new MouseListenerTranslator(gel, vv));

addGraphMouseListener(GraphMouseListener) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer

This is the interface for adding a mouse listener.

addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.AbstractPickedState

addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse

add a listener for mode changes

addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse

add a listener for mode changes

addListener(GraphEventListener, GraphEventType) - Method in interface edu.uci.ics.jung.graph.ArchetypeGraph

Tells the graph to add gel as a listener for changes in the graph structure

addListener(GraphEventListener, GraphEventType) - Method in class edu.uci.ics.jung.graph.event.GraphListenerHandler

addListener(GraphEventListener, GraphEventType) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph

addListener(PickEventListener) - Method in class edu.uci.ics.jung.visualization.MultiPickedState

Deprecated. Use addItemListener

addListener(PickEventListener) - Method in interface edu.uci.ics.jung.visualization.PickedState

Deprecated. Use addItemListener

addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseVertex

Adds the specified edge e and vertex v to the internal data structures of this vertex.

addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.DirectedSparseVertex

addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.LeanSparseVertex

addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleDirectedSparseVertex

addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleSparseVertex

addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleUndirectedSparseVertex

addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SparseVertex

addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.UndirectedSparseVertex

addNeighbor_internal(Edge, Vertex) - Method in class scratch.danyel.lazy.LazySparseVertex

addNewPartitionClass() - Method in class scratch.scott.partition.AbstractPartition

addNewPartitionClasses(int) - Method in class scratch.scott.partition.AbstractPartition

AddNodeDemo - Class in samples.graph

Thanks to Brad Allen for an original inspiration for this.

AddNodeDemo() - Constructor for class samples.graph.AddNodeDemo

addNotify() - Method in class edu.uci.ics.jung.visualization.BirdsEyeVisualizationViewer

Deprecated. defers setting the perferred size until the component is live and the layout size is known Adds the mouse clicker at that time.

addPostRenderPaintable(VisualizationViewer.Paintable) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer

addPreRenderPaintable(VisualizationViewer.Paintable) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer

addRenderingHints(Map) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator

addSlider(LevelFilter, int, int, int) - Method in class edu.uci.ics.jung.visualization.GraphDraw

Deprecated. Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.

addStaticFilter(Filter) - Method in class edu.uci.ics.jung.visualization.GraphDraw

Deprecated. Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.

addSubLayout(SubLayout) - Method in class edu.uci.ics.jung.visualization.subLayout.SubLayoutDecorator

addTool(JComponent) - Method in class edu.uci.ics.jung.visualization.GraphDraw

Deprecated. Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.

addToPipeline(LayoutTransformer) - Method in class samples.preview_new_graphdraw.iter.LocalGraphDraw

addToSelectionModifiers - Variable in class edu.uci.ics.jung.visualization.control.PickingGraphMousePlugin

additional modifiers for the action of adding to an existing selection

addUndirectedEdge(E, V, V) - Method in class scratch.joshua.jung_2_0.core.SimpleUndirectedSparseGraph

addUndirectedEdge(E, V, V) - Method in interface scratch.joshua.jung_2_0.core.UndirectedGraph

addUndirectedVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Deprecated. As of version 1.2, replaced by GraphUtils.addVertices(edu.uci.ics.jung.graph.Graph, int).

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG

Deprecated.

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG

Deprecated.

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.DefaultUserData

Adds user-level information to the node.

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UnifiedUserData

Adds user-level information to the node.

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in interface edu.uci.ics.jung.utils.UserDataContainer

Adds the specified data with the specified key to this object's user data repository, with the specified CopyAction.

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UserDataDelegate

addVertex(Vertex) - Method in interface edu.uci.ics.jung.graph.Graph

Adds v to this graph, and returns a reference to the added vertex.

addVertex(Hypervertex) - Method in interface edu.uci.ics.jung.graph.Hypergraph

Adds v to this graph, and returns a reference to the added vertex.

addVertex(Vertex) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseGraph

addVertex(BipartiteVertex, BipartiteGraph.Choice) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph

Adds a single vertex to the graph in the specified partition.

addVertex(Vertex) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph

Deprecated. Use addBipartiteVertex

addVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG

Deprecated. Adds v to this graph.

addVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.SetHypergraph

addVertex(V) - Method in interface scratch.joshua.jung_2_0.core.ArchetypeGraph

addVertex(V) - Method in class scratch.joshua.jung_2_0.core.SimpleDirectedSparseGraph

addVertex(V) - Method in class scratch.joshua.jung_2_0.core.SimpleUndirectedSparseGraph

addVertex(V) - Method in class scratch.tom.simpleGraph.DefaultGraph

addVertex(V) - Method in interface scratch.tom.simpleGraph.Graph

addVertexSubset(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils

Creates a vertex subset for g based on p, which will be maintained by the g's SubsetManager.

addVertexSubset(Predicate) - Method in class edu.uci.ics.jung.utils.SubsetManager

Creates a vertex subset based on p.

addVertices(Set) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG

Deprecated.

addVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Adds count vertices into a graph.

addVertices(Graph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Adds all vertices in the specified set to g.

addVertices(Hypergraph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Adds all vertices in the specified set to g.

addVertices(Collection<V>) - Method in class scratch.tom.simpleGraph.DefaultGraph

addVertices(Collection<V>) - Method in interface scratch.tom.simpleGraph.Graph

addVisEdge(Edge) - Method in class samples.preview_new_graphdraw.iter.UpdatableIterableLayout

Creates and returns a default VisEdge based on e.

addVisEdge(Edge) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout

addVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.iter.UpdatableIterableLayout

Creates and returns a default VisVertex based on v.

addVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout

addX(double) - Method in class edu.uci.ics.jung.visualization.Coordinates

Increases the x value by d.

addY(double) - Method in class edu.uci.ics.jung.visualization.Coordinates

Increases the y value by d.

adjustForGravity() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout

Shift all vertices so that the center of gravity is located at the center of the screen.

adjustForGravity() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt

Shift all vertices so that the center of gravity is located at the center of the screen.

adjustForGravity(Set) - Method in class samples.preview_new_graphdraw.iterablelayouts.KKLayout

Shift all vertices so that the center of gravity is located at the center of the screen.

adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.CrookedLineTransformer

adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.FitOnScreenTransformer

adjustSize(Dimension) - Method in interface samples.preview_new_graphdraw.transform.LayoutTransformer

Adjusts this transformer to be working in this size a space

adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.PipelineResizingTransformer

adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.SlightMarginTransformer

adjustSizes(Dimension) - Method in class samples.preview_new_graphdraw.iter.TransformerPipeline

advance() - Method in class samples.preview_new_graphdraw.iter.IterableLayout

Copies the current layout into the retunrable layout, then moves the visualization one step forward (by calling calculate).

advance() - Method in class samples.preview_new_graphdraw.iterablelayouts.WrappedIterableLayout

advance(NumberVertexValue, NumberVertexValue, NumberVertexValue, NumberVertexValue) - Method in class scratch.joshua.ranking.HITSRanker

advance(NumberVertexValue, NumberVertexValue) - Method in class scratch.joshua.ranking.HITSRanker

advance(NumberVertexValue, NumberVertexValue) - Method in class scratch.joshua.ranking.PageRankRanker

advance(NumberVertexValue, NumberVertexValue) - Method in class scratch.joshua.ranking.SingleValueRanker

advance(NumberVertexValue) - Method in class scratch.joshua.ranking.SingleValueRanker

advancePositions() - Method in class edu.uci.ics.jung.visualization.AbstractLayout

Implementors must override this method in order to create a Layout.

advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.CircleLayout

Do nothing.

advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout

advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt

advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.TreeLayout

?

advancePositions() - Method in class edu.uci.ics.jung.visualization.FadingVertexLayout

Deprecated. In addition to being a passthrough, this also advances the fade function by calling tick

advancePositions() - Method in class edu.uci.ics.jung.visualization.FRLayout

Moves the iteration forward one notch, calculation attraction and repulsion between vertices and edges and cooling the temperature.

advancePositions() - Method in class edu.uci.ics.jung.visualization.ISOMLayout

Advances the current positions of the graph elements.

advancePositions() - Method in interface edu.uci.ics.jung.visualization.Layout

Advances an incremental visualization.

advancePositions() - Method in class edu.uci.ics.jung.visualization.LayoutDecorator

advancePositions() - Method in class edu.uci.ics.jung.visualization.SpringLayout

Relaxation step.

advancePositions() - Method in class edu.uci.ics.jung.visualization.StaticLayout

advancePositions() - Method in class scratch.danyel.sample.CircleLayout

Does nothing: this method is non-incremental.'

advancePositions() - Method in class scratch.scott.AestheticSpringVisualizer

Relaxation step.

advancePositions() - Method in class scratch.scott.FastScalableMDS

advanceVisualization() - Method in class scratch.danyel.sample.CircleLayout

Relaxation step.

advPlain(String, StringBuffer, int) - Method in class scratch.scott.CSVParser

advPlain: unquoted field; return index of next separator

advQuoted(String, StringBuffer, int) - Method in class scratch.scott.CSVParser

advQuoted: quoted field; return index of next separator

AestheticSpringVisualizer - Class in scratch.scott

The SpringVisualizer package represents a visualization of a set of nodes.

AestheticSpringVisualizer(Graph, JComponent) - Constructor for class scratch.scott.AestheticSpringVisualizer

Constructor for a SpringVisualizer for a raw graph with associated component.

AestheticSpringVisualizer(Graph) - Constructor for class scratch.scott.AestheticSpringVisualizer

Constructor for a SpringVisualizer for a raw graph with associated dimension--the input knows how big the graph is.

AestheticSpringVisualizer(Graph, Dimension) - Constructor for class scratch.scott.AestheticSpringVisualizer

Constructor for a SpringVisualizer for a raw graph with associated dimension--the input knows how big the graph is.

AestheticSpringVisualizer(Graph, AestheticSpringVisualizer.LengthFunction, JComponent) - Constructor for class scratch.scott.AestheticSpringVisualizer

Constructor for a SpringVisualizer for a raw graph with associated component.

AestheticSpringVisualizer(Graph, AestheticSpringVisualizer.LengthFunction, Dimension) - Constructor for class scratch.scott.AestheticSpringVisualizer

Constructor for a SpringVisualizer for a raw graph with associated component.

AestheticSpringVisualizer.LengthFunction - Interface in scratch.scott

If the edge is weighted, then override this method to show what the visualized length is.

AestheticSpringVisualizer.SpringDimensionChecker - Class in scratch.scott

AestheticSpringVisualizer.SpringDimensionChecker() - Constructor for class scratch.scott.AestheticSpringVisualizer.SpringDimensionChecker

AestheticSpringVisualizer.SpringEdgeData - Class in scratch.scott

AestheticSpringVisualizer.SpringEdgeData(Edge) - Constructor for class scratch.scott.AestheticSpringVisualizer.SpringEdgeData

AestheticSpringVisualizer.SpringVertexData - Class in scratch.scott

AestheticSpringVisualizer.SpringVertexData(Vertex) - Constructor for class scratch.scott.AestheticSpringVisualizer.SpringVertexData

AffineTransformer - Class in edu.uci.ics.jung.visualization.transform

Provides methods to map points from one coordinate system to another, by delegating to a wrapped AffineTransform (uniform) and its inverse.

AffineTransformer() - Constructor for class edu.uci.ics.jung.visualization.transform.AffineTransformer

create an instance that does not transform points

AffineTransformer(AffineTransform) - Constructor for class edu.uci.ics.jung.visualization.transform.AffineTransformer

Create an instance with the supplied transform

affineTransformer - Variable in class samples.graph.PluggableRendererDemo

aggregateConstraint(Vertex) - Method in class edu.uci.ics.jung.algorithms.metrics.StructuralHoles

The aggregate constraint on v.

ALL_SINGLE_EVENTS - Static variable in interface edu.uci.ics.jung.graph.event.GraphEventType

allDataIsDecorated(Decorator) - Method in class scratch.scott.registry.EdgeRegistry

allDataIsDecorated(Decorator) - Method in class scratch.scott.registry.UserDataRegistry

allDataIsDecorated(Decorator) - Method in class scratch.scott.registry.VertexRegistry

allFilters - Variable in class edu.uci.ics.jung.visualization.GraphDraw

Deprecated.

alpha - Variable in class scratch.joshua.ranking.PageRankRanker

AlphabeticVertexFilter - Class in edu.uci.ics.jung.graph.filters.impl

A small example filter that accepts vertices that are alphabetically past the input value.

AlphabeticVertexFilter(String, StringLabeller, boolean) - Constructor for class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter

angleBetween(Point2D, Point2D) - Method in class edu.uci.ics.jung.visualization.control.RotatingGraphMousePlugin

Returns the angle between two vectors from the origin to points v1 and v2.

angleBetween(Coordinates, double, double) - Static method in class samples.preview_new_graphdraw.CoordinateUtil

AnimatedGraphDraw - Class in samples.preview_new_graphdraw.test

AnimatedGraphDraw() - Constructor for class samples.preview_new_graphdraw.test.AnimatedGraphDraw

AnimatedPickingGraphMousePlugin - Class in edu.uci.ics.jung.visualization.control

AnimatedPickingGraphMousePlugin supports the picking of one Graph Vertex.

AnimatedPickingGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.AnimatedPickingGraphMousePlugin

create an instance with default modifiers

AnimatedPickingGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AnimatedPickingGraphMousePlugin

create an instance, overriding the default modifiers

animatedPickingPlugin - Variable in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse

animatedPickingPlugin - Variable in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse

annotateEdge(GraphCollapser.CollapsedEdge, Collection) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser

Overridable method annotates the new collapsed edge with userdata from the original set.

annotateVertex(GraphCollapser.CollapsedVertex, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser

Overridable method annotates the new collapsed vertex with userdata from the rootset.

annotateVertex(LazySparseVertex) - Method in class scratch.danyel.lazy.LazySparseVertexFactory

Ok, here'a a Vertex.

annotateVertex(LazySparseVertex) - Method in class scratch.danyel.lazy.LazyWebCrawler.WebCrawlerFactory

append(Filter) - Method in class edu.uci.ics.jung.graph.filters.SerialFilter

Adds a filter to the end of the sequence of filters.

applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.AbstractLayout

Applies the filter to the current graph.

applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.contrib.TreeLayout

applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.FadingVertexLayout

Deprecated. Tracks the changes in the set of visible vertices from the set of actual vertices.

applyFilter(Graph) - Method in interface edu.uci.ics.jung.visualization.Layout

Sets this filtered graph to be the applicable graph.

applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.LayoutDecorator

applyFilter(Graph) - Method in class scratch.danyel.sample.CircleLayout

applyFilter(Graph) - Method in class scratch.scott.AestheticSpringVisualizer

ArchetypeEdge - Interface in edu.uci.ics.jung.graph

A interface for edge implementations in generalized graphs.

ArchetypeGraph - Interface in edu.uci.ics.jung.graph

A generalized graph which consists of an ArchetypeVertex set and an ArchetypeEdge set.

ArchetypeGraph<V,E> - Interface in scratch.joshua.jung_2_0.core

ArchetypeVertex - Interface in edu.uci.ics.jung.graph

A interface for vertex implementations in generalized graphs.

areEquivalent(ArchetypeGraph, ArchetypeGraph) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Returns true if g1 and g2 have equivalent vertex and edge sets (that is, if each vertex and edge in g1 has an equivalent in g2, and vice versa), and false otherwise.

areIncident(V, E) - Method in interface scratch.joshua.jung_2_0.core.ArchetypeGraph

areIncident(V, E) - Method in class scratch.joshua.jung_2_0.core.SimpleAbstractSparseGraph

areNeighbors(V, V) - Method in interface scratch.joshua.jung_2_0.core.ArchetypeGraph

areNeighbors(V, V) - Method in class scratch.joshua.jung_2_0.core.SimpleAbstractSparseGraph

Arrow - Class in edu.uci.ics.jung.visualization.contrib

This pluggable utility paints either a "classic" or a "sleek" filled arrow on a given edge.

Arrow(String, int, int) - Constructor for class edu.uci.ics.jung.visualization.contrib.Arrow

arrow_placement_tolerance - Variable in class edu.uci.ics.jung.visualization.PluggableRenderer

ArrowFactory - Class in edu.uci.ics.jung.visualization

A utility class for creating arrowhead shapes.

ArrowFactory() - Constructor for class edu.uci.ics.jung.visualization.ArrowFactory

as_list - Variable in class edu.uci.ics.jung.io.HypergraphReader

If true, specifies that each line of input implicitly represents a list of edges, where the first token specifies one endpoint, and the subsequent tokens specify a sequence of opposite endpoints.

asList - Variable in class edu.uci.ics.jung.io.BipartiteGraphReader

If true, specifies that each line of input implicitly represents a list of edges, where the first token specifies one endpoint, and the subsequent tokens specify a sequence of opposite endpoints.

aspectRatio - Variable in class edu.uci.ics.jung.visualization.Lens

Deprecated. ratio of width to height

assemble(boolean) - Method in class edu.uci.ics.jung.graph.filters.UnassembledGraph

Constructs a new graph based on the source graph.

assemble() - Method in class edu.uci.ics.jung.graph.filters.UnassembledGraph

assignDefaultEdgeTransitionWeights() - Method in class edu.uci.ics.jung.algorithms.importance.AbstractRanker

assignDefaultLabels(Set, int) - Method in class edu.uci.ics.jung.graph.decorators.StringLabeller

Assigns textual labels to every vertex passed in.

assignDefaultLabels(Set, int) - Method in class edu.uci.ics.jung.graph.decorators.ToStringLabeller

This method is not meaningful; it throws an IllegalArgumentException

assignToClusters(Map, Set) - Method in class edu.uci.ics.jung.algorithms.cluster.KMeansClusterer

Assigns each object to the cluster whose centroid is closest to the object.

AUTHORITY_KEY - Static variable in class edu.uci.ics.jung.algorithms.importance.HITS

AUTHORITY_KEY - Static variable in class edu.uci.ics.jung.algorithms.importance.HITSWithPriors

average() - Method in class edu.uci.ics.jung.statistics.Histogram

Returns the average of the values accumulated in the histogram bins.

average() - Method in class edu.uci.ics.jung.statistics.StatisticalMoments

average(long[]) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel

Returns the double average of a number of long values.

average(long[]) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer

Returns the double average of a number of long values.

averageDistances(ArchetypeGraph, Distance) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics

For each vertex v in graph, calculates the average shortest path length from v to all other vertices in graph using the metric specified by d, and returns the results in a Map from vertices to Double values.

averageDistances(ArchetypeGraph) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics

For each vertex v in g, calculates the average shortest path length from v to all other vertices in g, ignoring edge weights.