@inproceedings{demarneffe06generating,
  author = {{de Marneffe}, Marie-Catherine and Bill MacCartney and Christopher D. Manning},
  year = 2006,
  title = {Generating Typed Dependency Parses from Phrase Structure Parses},
  booktitle = {5th International Conference on Language Resources and Evaluation (LREC 2006)},
}

@inproceedings{demarneffe08stanford,
  author = {{de Marneffe}, Marie-Catherine and Christopher D. Manning},
  year = 2008,
  title = {The {S}tanford typed dependencies representation},
  booktitle = {COLING Workshop on Cross-framework and Cross-domain Parser Evaluation},
}

@article{Clegg07,
author = {Andrew B. Clegg and Adrian J. Shepherd},
title={Benchmarking natural-language parsers for biological applications using dependency graphs},
journal ={BMC Bioinformatics},
volume ={8:24},
year={2007},
}

@inproceedings{Pyysalo07,
author = {Sampo Pyysalo and Filip Ginter and Katri Haverinen and Juho Heimonen and Tapio Salakoski and Veronika Laippala},
title = {On the unification of syntactic annotations under the {S}tanford 
dependency scheme: A case study on {B}io{I}nfer and {GENIA}},
booktitle = {Proceedings of BioNLP 2007: Biological, translational, and clinical language processing (ACL07)},
year = {2007},
}

@InProceedings{Erkan07,
author = {Gunes Erkan and Arzucan Ozgur and Dragomir R. Radev},
title={Semi-Supervised Classification for Extracting Protein Interaction Sentences using Dependency Parsing},
booktitle = {Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL)},
year={2007},
}

@InProceedings{Greenwood07,
author = {Mark A. Greenwood and Mark Stevenson},
title={A Semi-Supervised Approach To Learning Relevant Protein-Protein Interaction Articles},
booktitle = {Proceedings of the Second BioCreAtIvE Challenge Workshop, Madrid, Spain},
year={2007},
}

@inproceedings{Urbain07,
  author = {Jay Urbain and Nazli Goharian and Ophir Frieder},
  title = {{IIT} {TREC} 2007 Genomics Track: Using Concept-Based Semantics in Context for Genomics Literature Passage Retrieval},
  booktitle = {The Sixteenth Text REtrieval Conference (TREC 2007) Proceedings},
  howpublished = {NIST Special Publication: SP 500-274},
  year = 2007
}

@phdthesis{Clegg08,
  author = {Andrew B. Clegg},
  year = 2008,
  title = {Computational-Linguistic Approaches to Biological Text Mining},
  school = {School of Crystallography, Birkbeck, University of London}
}

@article{giles08large,
  title = {Large-scale directional relationship extraction and resolution},
  author = {Cory B. Giles and Jonathan D. Wren},
  journal = {BMC Bioinformatics},
  year = 2008,
  volume = 9,
  number = {Suppl 9},
  pages = {S11},
}

@article{ozgur08identifying,
  title = {Identifying gene-disease associations using centrality on a literature mined gene-interaction network},
  author = {Arzucan {\"O}zg{\"u}r and Thuy Vu and G{\"u}nes Erkan and
                  Dragomir R. Radev}, 
  journal = {Bioinformatics},
  year = 2008, 
  volume = {24},
  number = 13,
  pages = {i277--i285},
}

@InProceedings{wang-neumann:2007:WTEP,
  author    = {Wang, Rui  and  Neumann, G\"{u}nter},
  title     = {Recognizing Textual Entailment Using Sentence Similarity based on Dependency Tree Skeletons},
  booktitle = {Proceedings of the ACL-PASCAL Workshop on Textual Entailment and Paraphrasing},
  month     = {June},
  year      = {2007},
  address   = {Prague},
  pages     = {36--41},
}

@InProceedings{blake:2007:WTEP,
  author    = {Blake, Catherine},
  title     = {The Role of Sentence Structure in Recognizing Textual Entailment},
  booktitle = {Proceedings of the ACL-PASCAL Workshop on Textual Entailment and Paraphrasing},
  month     = {June},
  year      = {2007},
  address   = {Prague},
  pages     = {101--106},
}

@InProceedings{harmeling:2007:WTEP,
  author    = {Harmeling, Stefan},
  title     = {An Extensible Probabilistic Transformation-based Approach to the Third Recognizing Textual Entailment Challenge},
  booktitle = {Proceedings of the ACL-PASCAL Workshop on Textual Entailment and Paraphrasing},
  month     = {June},
  year      = {2007},
  address   = {Prague},
  pages     = {137--142},
}

@InProceedings{chambers-EtAl:2007:WTEP,
  author    = {Chambers, Nathanael  and  Cer, Daniel  and  Grenager, Trond  and  Hall, David  and  Kiddon, Chloe  and  MacCartney, Bill  and  de Marneffe, Marie-Catherine  and  Ramage, Daniel  and  Yeh, Eric  and  Manning, Christopher D.},
  title     = {Learning Alignments and Leveraging Natural Logic},
  booktitle = {Proceedings of the ACL-PASCAL Workshop on Textual Entailment and Paraphrasing},
  month     = {June},
  year      = {2007},
  address   = {Prague},
  pages     = {165--170},
}

@inproceedings{chaumartin07knowledge,
  title = {{UPAR7}: A knowledge-based system for headline sentiment
                  tagging},
  author = {François-Régis Chaumartin},
  booktitle = {Proceedings of the 4th International Workshop on Semantic Evaluations (SemEval-2007)},
  pages = {422--425},
  year = 2007
}

@inproceedings{Zhuang06cikm,
  author = {Li Zhuang and Feng Jing and Xiao-yan Zhu and Lei Zhang},
  title = {Movie Review Mining and Summarization},
  booktitle = {Proc. ACM Conference on Information and Knowledge Management (CIKM)},
  year = 2006,
  pages = {43--50}
}
% Arlington, USA, November, 2006

@InProceedings{adams-EtAl:2007:WTEP,
  author    = {Adams, Rod  and  Nicolae, Gabriel  and  Nicolae, Cristina  and  Harabagiu, Sanda},
  title     = {Textual Entailment Through Extended Lexical Overlap and Lexico-Semantic Matching},
  booktitle = {Proceedings of the ACL-PASCAL Workshop on Textual Entailment and Paraphrasing},
  month     = {June},
  year      = {2007},
  address   = {Prague},
  pages     = {119--124},
}

@inproceedings{ramakrishnan08discovery,
  title = {Unsupervised Discovery of Compound Entities for
                  Relationship Extraction},
  author = {Cartic Ramakrishnan and Pablo N. Mendes and Shaojun Wang
                  and Amit P. Sheth},
  booktitle = {16th International Conference on Knowledge Engineering:
                  Practice and Patterns (EKAW 2008)},
  year = 2008,
  pages = {146--155}
}

@inproceedings{bjorne08how,
  author = {Jari Bj{\"o}rne and Sampo Pyysalo and Filip Ginter and
                  Tapio Salakoski},
  title = {How Complex are Complex Protein-protein Interactions?},
  booktitle = {3rd International Symposium on Semantic Mining in
                  Biomedecine},
  year = 2008
}

@inproceedings{kessler08icwsm,
 author = {Jason S. Kessler},
 title = {Polling the blogosphere: a rule-based approach to belief classification},
 booktitle = {International Conference on Weblogs and Social Media},
 year = {2008},
}

@article{Fundel07,
author = {Katrin Fundel and Robert K{\"u}ffner and Ralf Zimmer},
title={Rel{E}x -- Relation extraction using dependency parse trees},
journal ={Bioinformatics},
volume ={23},
year={2007},
}

@inproceedings{Pyysalo08,
author = {Antti Airola and Sampo Pyysalo and Jari Bj{\"o}rne and Tapio Pahikkala and Filip Ginter and Tapio Salakoski},
title={A graph kernel for protein-protein interaction extraction},
booktitle = {Proceedings of BioNLP 2008: Current Trends in Biomedical Natural Language Processing (ACL08)},
year = {2008},
}

@incollection{Meena07sentiment,
  author = {Arun Meena and T. V. Prabhakar},                  
  title = {Sentence Level Sentiment Analysis in the Presence of Conjuncts Using Linguistic Analysis},
  year = 2007,
  series = {Lecture Notes in Computer Science},
  publisher = {Springer},
  volume = {4425},
  booktitle = {Advances in Information Retrieval}
}

@inproceedings{Banko07,
author= {Michele Banko and Michael J. Cafarella and Stephen Soderland and Matt Broadhead and Oren Etzioni},
title = {Open Information Extraction from the Web},
booktitle ={Proceedings of the 20th International Joint Conference on Artificial Intelligence (IJCAI 2007)},
year = {2007},
}

@inproceedings{Zouaq06tai,
  author = {Amal Zouaq and Roger Nkambou and Claude Frasson},
  title = {The Knowledge Puzzle: An Integrated Approach of Intelligent Tutoring Systems and Knowledge Management},
  booktitle = {Proceedings of the 18th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2006)},
  pages = {575--582},
  year = 2006
}

@inproceedings{Zouaq07tel,
  author = {Amal Zouaq and Roger Nkambou and Claude Frasson},
  title = {Building Domain Ontologies From Text For Educational Purposes},
  booktitle = {Proceedings of the Second European Conference on Technology Enhanced Learning: Creating new learning experiences on a global scale},
  year = 2007
}

@InProceedings{kim09overview,
  author    = {Kim, Jin-Dong  and  Ohta, Tomoko  and  Pyysalo, Sampo  and  Kano, Yoshinobu  and  Tsujii, Jun'ichi},
  title     = {Overview of BioNLP'09 Shared Task on Event Extraction},
  booktitle = {Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task},
  year      = {2009},
  pages     = {1--9},
}

@inproceedings{xu09using,
  title = {Using a dependency parser to improve {SMT} for subject-object-verb languages},
  author = {Peng Xu and Jaeho Kang and Michael Ringgaard and Franz Och},
  booktitle = {NAACL 2009: Proceedings of Human Language Technologies, The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics},
  pages = {245--253},
  year = 2009,
}

@inproceedings{genzel10automatically,
  title = {Automatically Learning Source-side Reordering Rules for Large Scale Machine Translation},
  author = {Dmitriy Genzel},
  booktitle = {COLING-2010},
  year = 2010,
}

@inproceedings{singh10statistical,
  title = {Statistical Machine Translation of {E}nglish -- {M}anipuri using Morpho-syntactic and Semantic Information},
  author = {Thoudam Doren Sing and Sivaji Bandyopadhyay},
  booktitle = {Proceedings of the Association for Machine Translation in the Americas (AMTA 2010)},
  year = 2010,
}

@inproceedings{McClosky2011,
 author = {McClosky, David and Surdeanu, Mihai and Manning, Christopher D.},
 title = {Event extraction as dependency parsing for BioNLP 2011},
 booktitle = {Proceedings of the BioNLP Shared Task 2011 Workshop},
 series = {BioNLP Shared Task '11},
 year = {2011},
 pages = {41--45},
} 

@inproceedings{Bjorne2011,
 author = {Bj\"{o}rne, Jari and Salakoski, Tapio},
 title = {Generalizing biomedical event extraction},
 booktitle = {Proceedings of the BioNLP Shared Task 2011 Workshop},
 series = {BioNLP Shared Task '11},
 year = {2011},
 pages = {183--191},
} 

@article{Landeghem12,
author = {Sofie Van Landeghem and Jari Bj\"{o}rne and Thomas Abeel and Bernard De Baets and Tapio Salakoski and Yves Van de Peer},
title = {Semantically linking molecular entities in literature through entity relationships},
journal = {BMC Bioinformatics},
volume = {13},
year = {2012}
}

@phdthesis{Yarten10,
	  author = {Yael Garten},
	  year = 2010,
	  title = {Text mining of the scientific literature to identify pharmacogenomic interactions},
	  school = {Department of Biomedical Informatics, Stanford University}
}

@article{Pyysalo11,
author = {Sampo Pyysalo and Tomoko Ohta and Jun’ichi Tsujii},
title = {An analysis of gene/protein associations at {P}ub{M}ed scale},
journal = {Journal of Biomedical Semantics},
volume = {2},
year = {2011}}


** Information extraction 
@inproceedings{Wu2010,
 author = {Wu, Fei and Weld, Daniel S.},
 title = {Open information extraction using {W}ikipedia},
 booktitle = {Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics},
 series = {ACL '10},
 year = {2010},
 location = {Uppsala, Sweden},
} 

@inproceedings{Haghighi10,
 author = {Haghighi, Aria and Klein, Dan},
 title = {An entity-level approach to information extraction},
 booktitle = {Proceedings of the ACL 2010 Conference Short Papers},
 series = {ACLShort '10},
 year = {2010},
 pages = {291--295},
} 


** Sentiment analysis
@inproceedings{Joshi2010,
 author = {Joshi, Mahesh and Das, Dipanjan and Gimpel, Kevin and Smith, Noah A.},
 title = {Movie reviews and revenues: an experiment in text regression},
 booktitle = {Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics},
 series = {HLT '10},
 year = {2010},
 pages = {293--296},
} 

@inproceedings{Hassan10,
 author = {Hassan, Ahmed and Qazvinian, Vahed and Radev, Dragomir},
 title = {What's with the attitude?: identifying sentences with attitude in online discussions},
 booktitle = {Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing},
 series = {EMNLP '10},
 year = {2010},
 location = {Cambridge, Massachusetts},
 pages = {1245--1255},
}


** Dialogue
@inproceedings{Kluwer10,
 author = {Kl\"{u}wer, Tina and Uszkoreit, Hans and Xu, Feiyu},
 title = {Using syntactic and semantic based relations for dialogue act recognition},
 booktitle = {Proceedings of the 23rd International Conference on Computational Linguistics},
 series = {COLING '10},
 year = {2010},
 pages = {570--578},
} 

** Co-reference
@inproceedings{Chen12,
author = {Lin Chen and Barbara Di Eugenio},
title = {Co-reference via Pointing and Haptics in Multi-Modal Dialogues},
booktitle = {Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies},
year = {2012}
}                   

** Time
@inproceedings{McClosky12,
author = {David McClosky and Christopher D. Manning },
title = {Learning Constraints for Consistent Timeline Extraction},
booktitle = {Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning},
year = 2012}

** Semantics
@article{Zouaq10,
author = {Amal Zouaq and Michel Gagnon and Beno\^{i}t Ozell},
title = {Semantic Analysis using Dependency-based Grammars and Upper-Level Ontologies},
journal = {International Journal of Computational Linguistics and Applications},
volume = 1,
number = {1-2},
year = 2010
}

** disagreement detection
@inproceedings{Abbott11,
 author = {Abbott, Rob and Walker, Marilyn and Anand, Pranav and Fox Tree, Jean E. and Bowmani, Robeson and King, Joseph},
 title = {How can you say such things?!?: Recognizing disagreement in informal political argument},
 booktitle = {Proceedings of the Workshop on Languages in Social Media},
 series = {LSM '11},
 year = {2011},
 pages = {2--11},
} 

** word sense induction
@inproceedings{Lau12,
author = {Jey Han Lau and Paul Cook and Diana McCarthy and David Newman and Timothy Baldwin},
title = {Word Sense Induction for Novel Sense Detection},
booktitle = {Proceedings of the 13th Conference of the European Chapter of the Association for Computational Linguistics},
year = 2012
}

** textual entailment
@inproceedings{Pakray2011,
 author = {Pakray, Partha},
 title = {Answer validation through textual entailment},
 booktitle = {Proceedings of the 16th international conference on Natural language processing and information systems},
 series = {NLDB'11},
 year = {2011},
 pages = {324--329}, 
}

@inproceedings{Pakray2011a,
title = {A Textual Entailment System using Anaphora Resolution},
author = {Partha Pakray and Snehasis Neogi and Pinaki Bhaskar and Soujanya Poria and Sivaji Bandyopadhyay and Alexander Gelbukh},
booktitle = {Proceedings of the Text Analysis Conference (TAC)},
year = {2011}
}

@inproceedings{Kouylekov2010,
title = {{FBK} Participation in {RTE}-6: Main and {KBP} Validation Task},
author = {Milen Kouylekov and Yashar Mehdad and Matteo Negri and Elena Cabrio},
booktitle = {Proceedings of the Text Analysis Conference (TAC)},  
year = {2010},
}

@inproceedings{Glinos2010,
title = {System Description for {SAIC} Entry at {RTE}-6},
author = {Demetrios G. Glinos},
booktitle = {Proceedings of the Text Analysis Conference (TAC)},  
year = {2010},
}

@inproceedings{Shivare2010,
title = {Semi Cognitive approach to {RTE}-6 - Using {F}rame{N}et for Semantic Clustering},
author = {Himanshu Shivhare and Parul Nath and Anusha Jain},
booktitle = {Proceedings of the Text Analysis Conference (TAC)},  
year = {2010},
}

@inproceedings{Mehdad09,
title = {Using Lexical Resources in a Distance-Based Approach to {RTE}},
author = {Yashar Mehdad and Matteo Negri and Elena Cabrio and Milen Kouylekov and Bernardo Magnini},
booktitle = {Proceedings of the Text Analysis Conference (TAC)},  
year = {2009},
}

@inproceedings{Malakasiotis09,
title = {{AUEB} at {TAC} 2009},
author = {Prodromos Malakasiotis},
booktitle = {Proceedings of the Text Analysis Conference (TAC)},  
year = {2009},
}

 

** Export to other languages
@inproceedings{Haverinen2010a,
 author = {Haverinen, Katri and Ginter, Filip and Viljanen, Timo and Laippala, Veronika and Salakoski, Tapio},
 title = {Dependency-based PropBanking of clinical {F}innish},
 booktitle = {Proceedings of the Fourth Linguistic Annotation Workshop},
 series = {LAW IV '10},
 year = {2010},
 pages = {137--141},
} 
In this paper, we present a PropBank of clinical Finnish, an annotated corpus of verbal propositions and arguments. The clinical PropBank is created on top of a previously existing dependency treebank annotated in the Stanford Dependency (SD) scheme and covers 90% of all verb occurrences in the treebank.
We establish that the PropBank scheme is applicable to clinical Finnish as well as compatible with the SD scheme, with an overwhelming proportion of arguments being governed by the verb. This allows argument candidates to be restricted to direct verb dependents, substantially simplifying the PropBank construction.
The clinical Finnish PropBank is freely available at the address http://bionlp.utu.fi.     

@inproceedings{Haverinen2010b,
author = {Haverinen, Katri and Viljanen, Timo and Laippala, Veronika and Kohonen, Samuel and Ginter, Filip and Salakoski, Tapio},
title = {Treebanking {F}innish},
booktitle = {Proceedings of the Ninth International Workshop on Treebanks and Linguistic Theories (TLT)},
year = 2010}

@inproceedings{Seraji12,
author = {Mojgan Seraji and Be\'ata Megyesi and Joakim Nivre},
title = {A Basic Language Resource Kit for {P}ersian},
booktitle = {Proceedings of the Eight International Conference on Language Resources and Evaluation},
year = 2012}

@inproceedings{Potisuk10,
author = {Siripong Potisuk},
title = {Typed Dependency Relations for Syntactic Analysis of {T}hai Sentences},
booktitle = {Proceedings of PACLIC 24 Pacific Asia Conference on Language, Information and Computation},
year = 2010}

@inproceedings{Maarouf12,
author = {Isma\"{i}l {El Maarouf} and Jeanne Villaneau},
title = {A {F}rench Fairy Tale Corpus syntactically and semantically annotated},
booktitle = {Proceedings of the Eight International Conference on Language Resources and Evaluation},
year = 2012}


** 
@inproceedings{Petrov12,
author = {Slav Petrov and Ryan McDonald},
title = {Overview of the 2012 Shared Task on Parsing the Web},
booktitle = {First Workshop on Syntactic Analysis of Non-Canonical Language},
year = 2012}
"first shared task on parsing English web text"

@phdthesis{Chambers11,
author= {Nathanael Chambers},
title = {Inducing Event Schemas and their Participants from Unlabeled Text},
year = 2011,
school = {Department of Computer Science, Stanford University}
}

@inproceedings{BioNLP11,
 author = {Jin-Dong Kim and Sampo Pyysalo and Tomoko Ohta and Robert Bossy and Ngan Nguyen and Jun'ichi Tsujii},
 year = {2011},
 title = {Overview of BioNLP Shared Task 2011},
 booktitle = {Proceedings of the BioNLP Shared Task 2011 Workshop},
}

@inproceedings{poon09unsupervised,
 author = {Poon, Hoifung and Domingos, Pedro},
 title = {Unsupervised semantic parsing},
 booktitle = {Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing (EMNLP 2009)},
 year = {2009},
 pages = {1--10},
} 
%  isbn = {978-1-932432-59-6},
% location = {Singapore},

@InProceedings{mcdonald-EtAl:2013:Short,
  author    = {McDonald, Ryan  and  Nivre, Joakim  and  Quirmbach-Brundage, Yvonne  and  Goldberg, Yoav  and  Das, Dipanjan  and  Ganchev, Kuzman  and  Hall, Keith  and  Petrov, Slav  and  Zhang, Hao  and  T\"{a}ckstr\"{o}m, Oscar  and  Bedini, Claudia  and  Bertomeu Castell\'{o}, N\'{u}ria  and  Lee, Jungmee},
  title     = {Universal Dependency Annotation for Multilingual Parsing},
  booktitle = {Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers)},
  year      = {2013},
  pages     = {92--97},
}
%  month     = {August},
%  address   = {Sofia, Bulgaria},
%  publisher = {Association for Computational Linguistics},
%  url       = {http://www.aclweb.org/anthology/P13-2017}

@InProceedings{tsarfaty:2013:Short,
  author    = {Tsarfaty, Reut},
  title     = {A Unified Morpho-Syntactic Scheme of Stanford Dependencies},
  booktitle = {Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers)},
  year      = {2013},
  pages     = {578--584},
}
%  month     = {August},
%  address   = {Sofia, Bulgaria},
%  publisher = {Association for Computational Linguistics},
%  url       = {http://www.aclweb.org/anthology/P13-2103}

@inproceedings{marneffe14universal,
  year = {2014},
  author = {Marie-Catherine de Marneffe and Timothy Dozat and Natalia Silveira and
    Katri Haverinen and Filip Ginter and Joakim Nivre and Christopher D. Manning},
  title = {Universal Stanford Dependencies: A cross-linguistic typology},
  booktitle = {Proceedings of the Ninth International Conference on Language
    Resources and Evaluation (LREC-2014)}
}

@InProceedings{chang-tseng-jurafsky-manning:2009:SSST,
author    = {Chang, Pi-Chuan  and  Tseng, Huihsin and Jurafsky, Dan
and  Manning, Christopher D.},
title     = {Discriminative Reordering with {C}hinese Grammatical
Relations Features},
booktitle = {Proceedings of the Third Workshop on Syntax and
Structure in Statistical Translation},
month     = {June},
year      = {2009},
address   = {Boulder, Colorado},
url       = {pubs/ssst09-chang.pdf}
}

@inproceedings{schuster2016enhanced,
author = {Schuster, Sebastian and Manning, Christopher D.},
booktitle = {Proceedings of the Tenth International Conference on Language Resources and Evaluation (LREC 2016)},
title = {Enhanced {E}nglish {U}niversal {D}ependencies: An Improved Representation for Natural Language Understanding Tasks},
year = {2016}
}
