BP_PARSE_HMMSEARCH(1)

NAME
parse_hmmsearch - parse single/multiple HMMSEARCH results file(s) with
                  different output options

SYNOPSIS
parse_hmmsearch [--po] [--ps] -s hmmsearch_file

parse_hmmsearch [--po] [--ps] -m index_file

DESCRIPTION

  Mandatory Options:
  -s  HMMSEARCH file to parse.
  -m  INDEX file that contains a list of HMMSEARCH files for multiple
      parsing.

  Special Options:
  --po    Print only the hits that have positive scores.
  --ps    Print the total of positive scores found.
  --help  Show this documentation.

FEEDBACK

  Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

AUTHOR
  Mauricio Herrera Cuadra <mauricio at open-bio.org>