Bio::SeqIO::game::gameHandler(3)

NAME
Bio::SeqIO::game::gameHandler -- PerlSAX handler for game-XML

SYNOPSIS
This modules is not used directly

DESCRIPTION
Bio::SeqIO::game::gameHandler is the top-level XML handler invoked by PerlSAX

FEEDBACK

  Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists.

Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

  Support
Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

AUTHOR - Sheldon McKay
Email mckays@cshl.edu

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

  start_document
 Title   : start_document
 Function: begin parsing the document

  end_document
 Title   : end_document
 Function: finish parsing the document

  load
 Title   : load
 Usage   : $seqs = $handler->load
 Function: start parsing
 Returns : a ref to a list of sequence objects
 Args    : an optional flag to supress <computation_analysis> elements (not used yet)

  s_game
 Title   : s_game
 Function: begin parsing game element

  e_game
 Title   : e_game
 Function: process the game element

  e_seq
 Title   : e_seq
 Function: process the sequence element

  e_map_position
 Title   : e_map_position
 Function: process the map_position element

  e_annotation
 Title   : e_annotation
 Function: process the annotation