Metadata-Version: 2.1
Name: ipfx
Version: 1.0.0b2
Summary: Intrinsic Physiology Feature Extractor (IPFX) - tool for computing neuronal features from the intracellular electrophysiological recordings
Home-page: https://github.com/AllenInstitute/ipfx
Author: Allen Institute for Brain Science
Author-email: Marmot@AllenInstitute.onmicrosoft.com
License: UNKNOWN
Description: Welcome to Intrinsic Physiology Feature Extractor (ipfx)
        ========================================================
        
        ipfx is a python 2/3 package for computing intrinsic cell features from electrophysiology data.  This includes:
        
            * action potential detection (e.g. threshold time and voltage)
            * cell quality control (e.g. resting potential stability)
            * stimulus-specific cell features (e.g. input resistance)
        
        This software is designed for use in the Allen Institute for Brain Science electrophysiology data processing pipeline.
        
        ## Quickstart:
        
        To run:
        
        ```bash
         $ cd ipfx/ipfx/bin
         $ python pipeline_from_nwb.py input_nwb_file
        ```
        User must specify the OUTPUT_DIR inside the pipeline_from_nwb.py
        
        Input:
        * input_nwb_file: a full path to the NWB file with cell ephys recordings
        
        Output:
        
         * pipeline_input.json: input parameters
         * pipeline_output.json: output including cell features
         * output.nwb: NWB file including spike times
         * log.txt: run log
         * qc_figs: index.html includes cell figures and feature table and sweep.html includes sweep figures
        
        
        Deprecation Warning
        -------------------
        We are working towards a 1.0.0 release of ipfx! This will bring some new features, like NWB2 support, along with improvements to our documentation and testing. We will also drop support for
        - NWB1
        - Python 2
        
        Older versions of ipfx will continue to be available, but may receive only occasional bugfixes and patches.
        
Keywords: neuroscience,bioinformatics,scientific
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: Other/Proprietary License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
